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@ga4gh Global Alliance for Genomics and Health

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    24 repositories

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •27•48•34•3•Updated Jul 18, 2024Jul 18, 2024

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Python
      •
      Apache License 2.0
      •2•0•3•0•Updated Jul 17, 2024Jul 17, 2024

    • gks-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •2•0•3•1•Updated Jul 11, 2024Jul 11, 2024

    • data-security

      Public
      This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
      Python
      •15•22•3•4•Updated Mar 19, 2024Mar 19, 2024

    • ga4gh-testbed-lib

      Public
      Python library for creating GA4GH testbed reports according to a harmonized, cross-workstream schema
      testbed
      Python
      •
      Apache License 2.0
      •1•1•2•1•Updated Mar 14, 2024Mar 14, 2024

    • drs-compliance-suite

      Public
      Tests to verify the compliance of a DRS implementation with GA4GH DRS specification
      Python
      •
      Apache License 2.0
      •1•0•8•5•Updated Jul 3, 2024Jul 3, 2024

    • vrsatile-pydantic

      Public archive
      Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model
      Python
      •
      MIT License
      •1•0•4•0•Updated Oct 9, 2023Oct 9, 2023

    • refget-compliance-suite

      Public
      Repository for the Google Summer of Code for the Reference Retrieval API
      ga4ghgsoc-2018retrieval-api
      Python
      •
      Apache License 2.0
      •6•7•3•2•Updated May 21, 2024May 21, 2024

    • drs-test-a-thon

      Public
      This repository contains resources for the DRS Test-a-thon session @april Connect 2023
      Python
      •
      MIT License
      •0•0•0•3•Updated May 23, 2023May 23, 2023

    • tool-registry-validator

      Public
      Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas
      validatorga4ghtool-registry
      Python
      •1•4•3•3•Updated May 22, 2023May 22, 2023

    • refget-cloud

      Public
      AWS serverless implementation of the refget service
      ga4ghrefget
      Python
      •
      Apache License 2.0
      •0•2•0•8•Updated Dec 8, 2022Dec 8, 2022

    • ga4gh-drs-client

      Public
      Retrieve omics data and metadata from DRS-compliant web services
      Python
      •
      MIT License
      •3•6•0•7•Updated Dec 8, 2022Dec 8, 2022

    • htsget-compliance

      Public
      Compliance testing for htsget deployments
      Python
      •
      Apache License 2.0
      •2•1•0•4•Updated Dec 8, 2022Dec 8, 2022

    • refget-client

      Public
      Reference Sequence Fetcher : A client library in Python for Reference Servers
      Python
      •
      MIT License
      •1•1•0•5•Updated Dec 8, 2022Dec 8, 2022

    • htsget

      Public
      Python client for GA4GH htsget protocol
      Python
      •
      Apache License 2.0
      •3•14•8•0•Updated Nov 7, 2022Nov 7, 2022

    • ga4gh-schemas

      Public archive
      Models and APIs for Genomic data. RETIRED 2018-01-24
      Python
      •
      Apache License 2.0
      •114•214•161•0•Updated Oct 28, 2022Oct 28, 2022

    • fasp-clients

      Public
      a place for client code from the FASP effort
      Python
      •
      Apache License 2.0
      •3•2•6•0•Updated Sep 13, 2022Sep 13, 2022

    • vrs-protobuf

      Public
      A framework for translating the VRS schema elements to Google Protocol Buffers
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • cloud-interop-testing

      Public
      Interoperable execution of workflows using GA4GH APIs
      workflowwdlga4ghcwl
      Python
      •
      Apache License 2.0
      •8•9•42•0•Updated May 19, 2021May 19, 2021

    • refget-loader

      Public
      Schedule the processing of ENA sequences and upload to S3 public dataset
      ga4ghrefget
      Python
      •0•2•0•0•Updated May 19, 2020May 19, 2020

    • ga4gh-server

      Public archive
      Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
      bioinformaticsservergenomicshealthvariantsglobalrnagenome-annotationga4ghreference-implementation
      Python
      •
      Apache License 2.0
      •93•96•149•5•Updated Jan 24, 2018Jan 24, 2018

    • ga4gh-client

      Public archive
      Client implementation for accessing GA4GH APIs
      Python
      •
      Apache License 2.0
      •12•6•16•2•Updated Mar 29, 2017Mar 29, 2017

    • ga4gh-converters

      Public archive
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 29, 2017Mar 29, 2017

    • ga4gh-common

      Public archive
      common modules for GA4GH schemas, client and server, collected into one package
      Python
      •
      Apache License 2.0
      •7•3•4•0•Updated Mar 14, 2017Mar 14, 2017