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    124 repositories

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •27•48•34•3•Updated Jul 18, 2024Jul 18, 2024

    • va-spec

      Public
      An information model for representing variant annotations.
      Jupyter Notebook
      •2•15•100•1•Updated Jul 17, 2024Jul 17, 2024

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Python
      •
      Apache License 2.0
      •2•0•3•0•Updated Jul 17, 2024Jul 17, 2024

    • gk-pilot

      Public
      A pilot implementation of GKS Work Stream specifications.
      Makefile
      •
      Apache License 2.0
      •1•0•12•1•Updated Jul 16, 2024Jul 16, 2024

    • vrs

      Public
      Extensible specification for representing and uniquely identifying biological sequence variation
      bioinformaticsgenomicsvariation
      Jupyter Notebook
      •
      Apache License 2.0
      •32•78•37•2•Updated Jul 15, 2024Jul 15, 2024

    • cat-vrs-python

      Public
      GA4GH Categorical Variation Representation Python Implementation
      Makefile
      •
      Apache License 2.0
      •1•0•1•1•Updated Jul 15, 2024Jul 15, 2024

    • quality-control-wgs

      Public
      Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
      Jupyter Notebook
      •
      Apache License 2.0
      •3•7•7•5•Updated Jul 15, 2024Jul 15, 2024

    • task-execution-schemas

      Public
      Apache License 2.0
      •28•80•37•10•Updated Jul 12, 2024Jul 12, 2024

    • gks-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •2•0•3•1•Updated Jul 11, 2024Jul 11, 2024

    • va-spec-python

      Public
      GA4GH Variation Annotation Python Implementation
      Makefile
      •
      Apache License 2.0
      •1•0•1•0•Updated Jul 11, 2024Jul 11, 2024

    • gks-common

      Public
      Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
      Makefile
      •
      Apache License 2.0
      •0•2•2•0•Updated Jul 10, 2024Jul 10, 2024

    • drs-compliance-suite

      Public
      Tests to verify the compliance of a DRS implementation with GA4GH DRS specification
      Python
      •
      Apache License 2.0
      •1•0•8•5•Updated Jul 3, 2024Jul 3, 2024

    • pedigree-tools

      Public
      JavaScript
      •0•1•2•3•Updated Jul 3, 2024Jul 3, 2024

    • gks-ashg-2024-hackathon

      Public
      MIT License
      •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • workflow-execution-service-schemas

      Public
      The WES API is a standard way to run and manage portable workflows.
      workflowwdlga4ghcwl
      Apache License 2.0
      •38•82•50•4•Updated Jun 28, 2024Jun 28, 2024

    • data-repository-service-schemas

      Public
      A repository for the schemas used for the Data Repository Service.
      Apache License 2.0
      •52•60•64•23•Updated Jun 24, 2024Jun 24, 2024

    • gks-clinvar

      Public
      A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data
      Apache License 2.0
      •0•0•9•4•Updated Jun 24, 2024Jun 24, 2024

    • tool-registry-service-schemas

      Public
      APIs for discovering genomics tools, their metadata and their containers
      apitoolworkflowwdlga4ghcwl
      Shell
      •
      Apache License 2.0
      •18•30•25•0•Updated Jun 20, 2024Jun 20, 2024

    • TASC

      Public
      TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
      interoperabilityharmonisationtechnical-alignment
      7•8•20•2•Updated Jun 18, 2024Jun 18, 2024

    • pedigree_family_history_terminology

      Public
      Java
      •
      Apache License 2.0
      •3•4•11•1•Updated Jun 14, 2024Jun 14, 2024

    • ga4gh-doi

      Public
      Apache License 2.0
      •0•0•0•1•Updated Jun 14, 2024Jun 14, 2024

    • refget

      Public
      GA4GH Refget specifications docs
      collectiondigestfastasequence
      HTML
      •6•14•24•0•Updated Jun 12, 2024Jun 12, 2024

    • gks-validator

      Public
      MIT License
      •0•1•0•0•Updated Jun 10, 2024Jun 10, 2024

    • ga4gh-testbed-ui

      Public
      Web UI for the GA4GH Testbed Reporting service
      testbed
      JavaScript
      •
      Apache License 2.0
      •1•2•0•1•Updated Jun 7, 2024Jun 7, 2024

    • ga4gh-testbed-api

      Public
      GA4GH-wide testbed infrastructure for hosting testbed reports
      Java
      •1•1•8•0•Updated Jun 7, 2024Jun 7, 2024

    • refget-compliance-suite

      Public
      Repository for the Google Summer of Code for the Reference Retrieval API
      ga4ghgsoc-2018retrieval-api
      Python
      •
      Apache License 2.0
      •6•7•3•2•Updated May 21, 2024May 21, 2024

    • Get-Started-with-GA4GH-APIs

      Public
      ISMB 2022 tutorial on FASP and Starter Kit
      Jupyter Notebook
      •
      Apache License 2.0
      •1•5•5•1•Updated May 21, 2024May 21, 2024

    • ga4gh-starter-kit-drs

      Public
      Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification
      starter-kit
      Java
      •
      Apache License 2.0
      •7•4•9•1•Updated May 1, 2024May 1, 2024

    • product-process

      Public
      Other
      •5•1•0•0•Updated Apr 29, 2024Apr 29, 2024

    • sa-spec

      Public
      sequence annotation specification repository
      Apache License 2.0
      •2•0•1•0•Updated Apr 23, 2024Apr 23, 2024