The repository contain directories of projects done during the bioinformatics degree program
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Updated
Nov 25, 2022 - HTML
The repository contain directories of projects done during the bioinformatics degree program
GATK WGS workflow
This repository contains data and code for our analysis of the genome of a Plasmodium falciparum strain with reduced susceptibility to Artemisinin-Based Combination Therapy (ACT) drugs. We performed whole-genome sequencing of the HSOG3 clinical isolate and compared it with a large dataset of global P. falciparum samples.
Implementation of WGS genotyping pipeline for EFIGA FBS FAMILY dataset
A pipeline to call variants for RNASeq implemented with python.
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
Genome Analysis Toolkit
msgen: R functions for interfacing with the Microsoft Genomics service on Azure.
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