An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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Updated
Jul 3, 2024 - C++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
SPAdes Genome Assembler
SortMeRNA: next-generation sequence filtering and alignment tool
UGENE is free open-source cross-platform bioinformatics software
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Get assembly statistics from FASTA and FASTQ files
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Software for predicting library complexity and genome coverage in high-throughput sequencing.
gargammel is an ancient DNA simulator
BAM Statistics, Feature Counting and Annotation
Maximum likelihood demultiplexing
Genomics Extension for SQLite
A versatile compressor of third generation sequencing reads.
Segmented HAPlotype Estimation and Imputation Tool
AStarix: Fast and Optimal Sequence-to-Graph Aligner
Wally: Visualization of aligned sequencing reads and contigs
Fast and accurate sequence demultiplexing
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