Environment to practice Bioinformatics
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Updated
Jun 14, 2020 - Dockerfile
Environment to practice Bioinformatics
Build Docker container for RseQC and (optionally) convert to Apptainer/Singularity.
Build Docker container for Picard Tools and (optionally) convert to Apptainer/Singularity.
Build Docker container for BWA and (optionally) convert to Apptainer/Singularity.
Run Oxford Nanopore MinION software in Docker containers. Mirror of https://gitlab.com/lapinskim/minion_docker
Build Docker container for FastQ Screen software and (optionally) convert to Apptainer/Singularity.
Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
Build Docker container for ea-utils and (optionally) convert to Apptainer/Singularity.
Build Docker container for Homer software and optionally convert to Singularity/Apptainer for running on HPC system
Build Docker container for HISAT2 and (optionally) convert to Apptainer/Singularity.
Build Docker container for Bowtie 2 and (optionally) convert to Apptainer/Singularity.
Build Docker container for TopHat2 and (optionally) convert to Apptainer/Singularity.
Build Docker container for BBTools and (optionally) convert to Apptainer/Singularity.
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.
Add a description, image, and links to the sequencing topic page so that developers can more easily learn about it.
To associate your repository with the sequencing topic, visit your repo's landing page and select "manage topics."