A repository for setting up a RNAseq workflow
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Updated
Apr 10, 2017 - R
A repository for setting up a RNAseq workflow
Analysis Pipeline for Single Cell ATAC-seq
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
R package to work with ctDNA sequencing data
The is mostly a wrapper tool using phyloseq and microbiome R packages.
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
An R package for estimating library complexity
A workflow for eTAM-seq data processing.
deepStats: a stastitical toolbox for deeptools and genomic signals
1000 Genomes Project Metadata R Package
Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)
Annotation and Analysis of Deep Sequencing Variants from CirSeq
El genoma pequeño - analysis workflow for "the little genome"
De novo SNV analysis pipeline
Engineered Peptide Barcodes for In-Depth Analyses of Binding Protein Ensembles - replication code
DNA Imputation tool for Generis.
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