Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
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Updated
Aug 3, 2023 - Shell
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
🌱📦 A collection of bioinformatics tools for working with sequence data.
iMARGI-Docker distributes the iMARGI sequencing data processing pipeline
less like viewer for fastq files
Analysis of MinION sequence data from water and sediment samples for Avian Influenza Detection
A workflow for m6A-SAC-seq data processing.
This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.
Calculate fastq reads and sequencing coverage
Pipeline to reconstruct the targeted dominant consensus genome of viral samples and analyze their within-host variability.
Automated Pipeline for Variant/Haplotype Calling and Filtering
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
Construction of IHGV sequences from RNA-seq
Variant calling of WGS datasets
A SLURM wrapper around the Biohub seqbot download script
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