Matlab code for Bayesian Network Component Analysis
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Updated
Nov 11, 2015 - MATLAB
Matlab code for Bayesian Network Component Analysis
Imoto, H. & Okada, M. Signal-dependent regulation of early-response genes and cell cycle: a quantitative view. Curr. Opin. Syst. Biol. 15, 100–108 (2019).
Python implementation for René Thomas's Framework
The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!
The Matlab tool for Prediction Uncertainty Analysis (PUA) integrates Profile Likelihood analysis with Bayesian sampling.
Utilities for working with SLV and DAT files.
Causal Inference Networks for Determining Expression Relationships Anthology
Supplementary Material for Multistate Control Paper
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Genome-Scale Metabolic Model of CD8+ T-Cells
Simulation of the TGF-β/SMAD pathway in single cells
PhD thesis: Molecular feedback and self-organisation in the PAR polarity network
A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033
The modeling code used for Manole et al, Canc Res, 2016.
Accessory R functions to support DBSolveOptimum
Reconstruct a Transcriptional Regulatory Network using the principle of Maximum Entropy.
Inoue, K. et al. Oscillation dynamics underlie functional switching of NF-κB for B-cell activation. npj Syst. Biol. Appl. 2, 16024 (2016).
Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
A demo repository with example code for using the Systems Biology Simulation Core Library (SBSCL).
The package is plugin for Visual Studio Code editor to highlight Heta language code.
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