Allen Institute for Neural Dynamics

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aind-data-schema aind-data-schema Public

A library that defines AIND data schema and validates JSON.

Python 19 13
aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

Python 11 3
TigerASI TigerASI Public

a lightweight python interface for ASI brand Tiger Controllers

Python 5 2
dynamic-foraging-task dynamic-foraging-task Public

Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

Python 5 4
exa-spim-hardware exa-spim-hardware Public

5
parallax parallax Public

GUI control software for the Modular Insertion System (MIS)

Python 4 1

Repositories

voxel Public
core code for spim acquisition

AllenNeuralDynamics/voxel’s past year of commit activity

Python 2 MIT 0 19 1 Updated Jul 20, 2024
aind-mri-utils Public
Allen Institute for Neural Dynamics MRI utilities

AllenNeuralDynamics/aind-mri-utils’s past year of commit activity

Python 0 MIT 0 1 0 Updated Jul 20, 2024
dynamic-foraging-task Public
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity

Python 5 MIT 4 60 (2 issues need help) 3 Updated Jul 20, 2024
aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc

AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity

Python 1 MIT 0 15 (1 issue needs help) 0 Updated Jul 19, 2024
aind-data-access-api Public
Library to interface with AIND databases

AllenNeuralDynamics/aind-data-access-api’s past year of commit activity

Python 2 MIT 0 9 0 Updated Jul 19, 2024
Aind.Behavior.ForceForaging Public
A repository for the aind-force-foraging experiment

AllenNeuralDynamics/Aind.Behavior.ForceForaging’s past year of commit activity

C# 0 MIT 0 2 0 Updated Jul 19, 2024
view Public
Model/View for exa-spim

AllenNeuralDynamics/view’s past year of commit activity

Python 1 0 19 2 Updated Jul 19, 2024
aind-smartspim-flatfield-estimation Public
Performs large-scale flatfield correction using zarr format

AllenNeuralDynamics/aind-smartspim-flatfield-estimation’s past year of commit activity

Dockerfile 0 MIT 0 0 0 Updated Jul 19, 2024
Aind.Behavior.VrForaging.Analysis Public
A repository with analysis code for the aind-vr-foraging experiment

AllenNeuralDynamics/Aind.Behavior.VrForaging.Analysis’s past year of commit activity

Jupyter Notebook 0 MIT 0 4 0 Updated Jul 19, 2024
aind-ephys-rig-qc Public
Post-experiment temporal alignment and quality control

AllenNeuralDynamics/aind-ephys-rig-qc’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jul 19, 2024