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@DeplanckeLab

Deplancke's Lab

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  1. BRB-seqTools BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    Java 25 10

  2. ASAP ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    Java 23 10

  3. ChromatinHD ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 16

  4. Live-seq Live-seq Public

    Live-seq

    R 7 5

  5. SSPCI SSPCI Public

    Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

    R 3

  6. Areg Areg Public

    Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

    HTML 3 1

Repositories

Showing 10 of 30 repositories
  • dgrpool Public

    Scripts used for the DGRPool ELife manuscript

    DeplanckeLab/dgrpool’s past year of commit activity
    HTML 0 CC0-1.0 0 0 0 Updated Jul 18, 2024
  • Chromatin_modules Public

    Chromatin Modules across cell types.The code

    DeplanckeLab/Chromatin_modules’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 16, 2024
  • dgrpool_web Public

    DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.

    DeplanckeLab/dgrpool_web’s past year of commit activity
    Ruby 0 GPL-3.0 0 12 0 Updated Jul 15, 2024
  • Context-TFs Public

    Material and source code for Kribelbauer et al.

    DeplanckeLab/Context-TFs’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 0 0 0 Updated Jul 12, 2024
  • scfair Public

    an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

    DeplanckeLab/scfair’s past year of commit activity
    JavaScript 0 0 7 1 Updated Jul 9, 2024
  • ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    DeplanckeLab/ChromatinHD’s past year of commit activity
    Python 16 MIT 0 5 0 Updated Jul 5, 2024
  • TF-seq Public

    Material and source code for TF-seq manuscript

    DeplanckeLab/TF-seq’s past year of commit activity
    HTML 0 CC0-1.0 0 1 0 Updated Jun 18, 2024
  • updeplasrv1 Public

    Scripts for updeplasrv1 Web server (Dockerized)

    DeplanckeLab/updeplasrv1’s past year of commit activity
    CSS 0 GPL-3.0 0 0 0 Updated Apr 5, 2024
  • ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    DeplanckeLab/ASAP’s past year of commit activity
    Java 23 GPL-3.0 10 9 0 Updated Apr 3, 2024
  • FastReadCounter Public

    Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)

    DeplanckeLab/FastReadCounter’s past year of commit activity
    Java 0 GPL-3.0 0 2 0 Updated Dec 20, 2023
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