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1. neural-assembly-detection neural-assembly-detection Public

   Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.

   MATLAB 12 6

2. CILVA CILVA Public

   Code for fitting the calcium imaging latent variable analysis model. Accompanies the paper "Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data." by M. A. Tripl…

   Jupyter Notebook 7 1

3. Zebrafish_hunting_behavior Zebrafish_hunting_behavior Public

   Code published with the paper Avitan L., Pujic J., Mölter J., McCullough M., Zhu S., Sun, B. Myhre, A.E., Goodhill, G.J. "Large Behavioral signatures of a developing neural code". Current Biology 2020

   MATLAB

4. fmr1-behavior-assay-processing fmr1-behavior-assay-processing Public

   Code published with the paper Zhu S.I., McCullough M., Pujic J., Sibberas J., Sun, B. Darveniza T., Bucknall B., Avitan L., and Goodhill, G.J. "fmr1 mutation alters the early development of sensory…

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5. ZFLOW ZFLOW Public

   Code for running CFD simulation of larval zebrafish, and MATLAB code for pre/postprocessing. Accompanies the preprint "Behavioral adaptation to changing energy constraints via altered frequency of …

   C++ 1