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KeyError for parameter with amici prefix
AMICI
bug
Something isn't working
#1418
opened Jun 18, 2024 by
matthiaskoenig
AmiciObjective: For sensi_orders>0, check that sensitivities wrt all relevant parameters are computed
AMICI
#1414
opened Jun 13, 2024 by
dweindl
Aggregated Objective does not return expected outputs using Something isn't working
return_dict
AMICI
bug
#1410
opened Jun 7, 2024 by
arrjon
Lazy loading of optimization results from HDF5
enhancement
New feature or request
#1405
opened May 22, 2024 by
dweindl
Check pypesto/sample/geweke_test.py calculate_zscore/spectrum0/spectrum
sampling
Related to sampling
#1392
opened May 5, 2024 by
dweindl
Handling of simulation failures in AmiciPredictor
AMICI
ensembles
Related to parameter ensembles
#1359
opened Apr 4, 2024 by
dweindl
General Discussion regarding Ensemble
ensembles
Related to parameter ensembles
help wanted
Extra attention is needed
question
Further information is requested
#1358
opened Apr 4, 2024 by
PaulJonasJost
What's the purpose of Related to parameter ensembles
question
Further information is requested
Ensemble.predictions
?
ensembles
#1357
opened Apr 4, 2024 by
dweindl
Relative: implement log-normal distribution
enhancement
New feature or request
hierarchical
Related to hierarchical optimization
#1350
opened Apr 2, 2024 by
Doresic
Visualize: add description of scale in parameter plots
enhancement
New feature or request
visualization
Related to any visualization
#1335
opened Mar 25, 2024 by
Doresic
Easy switching between likelihood and posterior
enhancement
New feature or request
#1325
opened Mar 11, 2024 by
arrjon
Adaptive Stopping and Continuation of Sampling
enhancement
New feature or request
#1322
opened Mar 8, 2024 by
arrjon
Enable saving custom information with OptimizerResult
enhancement
New feature or request
#1321
opened Mar 8, 2024 by
dweindl
All CPUs are utilized for Something isn't working
np.linalg.eig/h
, ndim dependent
bug
#1312
opened Feb 27, 2024 by
dilpath
pypesto.ensemble.ensemble.EnsemblePrediction.compute_chi2 incorrectly assumes all edatas have equal number of timepoints
bug
Something isn't working
ensembles
Related to parameter ensembles
#1296
opened Jan 25, 2024 by
dweindl
Decouple pypesto.ensemble.ensemble.Ensemble from pypesto.predict.amici_predictor.AmiciPredictor
AMICI
ensembles
Related to parameter ensembles
#1294
opened Jan 25, 2024 by
dweindl
Decouple New feature or request
ensembles
Related to parameter ensembles
AmiciPredictor
from AmiciObjective
AMICI
enhancement
#1291
opened Jan 23, 2024 by
dweindl
Fix time axis in pypesto.visualize.sampling.sampling_prediction_trajectories
ensembles
Related to parameter ensembles
visualization
Related to any visualization
#1290
opened Jan 23, 2024 by
dweindl
Add dedicated example for ensembles
documentation
enhancement
New feature or request
ensembles
Related to parameter ensembles
#1289
opened Jan 19, 2024 by
dweindl
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