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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.3k 365

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction for up to a thousand channels

    Python 434 229

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 334 239

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 169 42

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 151 57

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 66 21

Repositories

Showing 10 of 19 repositories
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,267 BSD-3-Clause 365 84 (1 issue needs help) 13 Updated Jul 17, 2024
  • Kilosort Public

    Fast spike sorting with drift correction for up to a thousand channels

    MouseLand/Kilosort’s past year of commit activity
    Python 434 GPL-3.0 229 20 1 Updated Jul 16, 2024
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 151 GPL-3.0 57 10 1 Updated Jul 9, 2024
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 169 GPL-3.0 42 3 0 Updated Jul 3, 2024
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 43 BSD-3-Clause 20 19 3 Updated Jun 21, 2024
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 334 GPL-3.0 239 94 (1 issue needs help) 5 Updated Jun 19, 2024
  • stringer-pachitariu-et-al-2018a Public

    Recordings of 10k neurons during spontaneous behaviors

    MouseLand/stringer-pachitariu-et-al-2018a’s past year of commit activity
    MATLAB 49 15 2 2 Updated Mar 22, 2024
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 11 GPL-3.0 2 0 0 Updated Nov 16, 2023
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 29, 2023
  • pykilosort Public

    WIP: Python port of Kilosort2

    MouseLand/pykilosort’s past year of commit activity
    Python 50 GPL-2.0 28 28 (1 issue needs help) 3 Updated Jul 8, 2023
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