Systems and Synthetic Biology at Chalmers University of Technology

93 followers
Gothenburg, Sweden
https://www.sysbio.se

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Human-GEM Human-GEM Public

The generic genome-scale metabolic model of Homo sapiens

MATLAB 88 39
yeast-GEM yeast-GEM Public

The consensus GEM for Saccharomyces cerevisiae

MATLAB 92 43
RAVEN RAVEN Public

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

MATLAB 98 52
GECKO GECKO Public

Toolbox for including enzyme constraints on a genome-scale model.

MATLAB 64 46
DLKcat DLKcat Public

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Python 118 51

Repositories

GECKO Public
Toolbox for including enzyme constraints on a genome-scale model.

SysBioChalmers/GECKO’s past year of commit activity

MATLAB 64 MIT 46 10 2 Updated Jul 18, 2024
RAVEN Public
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

SysBioChalmers/RAVEN’s past year of commit activity

MATLAB 98 52 8 2 Updated Jul 17, 2024
sysbio.se Public
The sysbio.se source code

SysBioChalmers/sysbio.se’s past year of commit activity

CSS 0 MIT 2 1 0 Updated Jul 15, 2024
Human-GEM Public
The generic genome-scale metabolic model of Homo sapiens

SysBioChalmers/Human-GEM’s past year of commit activity

MATLAB 88 CC-BY-4.0 39 74 5 Updated Jun 24, 2024
Yarrowia_Multifactor Public
Data and scripts used for the RNA-seq analysis of Yarrowia lipolytica (fat-free strain and urea utilisation)

SysBioChalmers/Yarrowia_Multifactor’s past year of commit activity

MATLAB 1 MIT 1 0 0 Updated Jun 24, 2024
yeast-GEM Public
The consensus GEM for Saccharomyces cerevisiae

SysBioChalmers/yeast-GEM’s past year of commit activity

MATLAB 92 CC-BY-4.0 43 31 (6 issues need help) 0 Updated May 23, 2024
BrainMetabolismModeling Public
Modeling of the energy metabolism of the brain

SysBioChalmers/BrainMetabolismModeling’s past year of commit activity

MATLAB 2 MIT 0 0 0 Updated Jan 14, 2024
hanpo-GEM Public
Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)

SysBioChalmers/hanpo-GEM’s past year of commit activity

MATLAB 4 CC-BY-4.0 1 1 0 Updated Jan 5, 2024
GEMsforTrophicLevels Public

SysBioChalmers/GEMsforTrophicLevels’s past year of commit activity

HTML 0 2 0 0 Updated Dec 19, 2023
Worm-GEM Public
Genome-scale model for Caenorhabditis elegans

SysBioChalmers/Worm-GEM’s past year of commit activity

MATLAB 2 CC-BY-4.0 1 0 0 Updated Dec 10, 2023