UMCU Genetics

Repository for genetics code

Pinned Loading

RNASeq-NF RNASeq-NF Public

RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

Nextflow 7 8
NF-IAP NF-IAP Public

Illumina Analysis Pipeline in Nextflow

Nextflow 2 5
NextflowModules NextflowModules Public

UMCU Genetics Nextflow modules

Nextflow 25 10

Repositories

DIMS Public
Direct Infusion Mass Spectrometry pipeline

UMCUGenetics/DIMS’s past year of commit activity

R 2 MIT 2 11 1 Updated Jul 19, 2024
CustomModules Public

UMCUGenetics/CustomModules’s past year of commit activity

R 0 MIT 0 0 1 Updated Jul 19, 2024
DxNextflowRNA Public

UMCUGenetics/DxNextflowRNA’s past year of commit activity

R 0 0 0 4 Updated Jul 19, 2024
USEQ_tools Public
Utility scripts to work with Genologics Clarity LIMS

UMCUGenetics/USEQ_tools’s past year of commit activity

Python 2 MIT 0 0 2 Updated Jul 17, 2024
GIABEval Public
Genome-in-a-bottle evaluation tool to determine statistics

UMCUGenetics/GIABEval’s past year of commit activity

0 MIT 0 0 1 Updated Jul 16, 2024
Dx_resources Public
Resources used in diagnostics pipelines

UMCUGenetics/Dx_resources’s past year of commit activity

Python 3 MIT 0 15 0 Updated Jul 12, 2024
ManuscriptSMNGeneConversion Public
Scripts and files related to the SMN gene conversion manuscript

UMCUGenetics/ManuscriptSMNGeneConversion’s past year of commit activity

0 MIT 0 0 1 Updated Jul 12, 2024
NextflowModules Public
UMCU Genetics Nextflow modules

UMCUGenetics/NextflowModules’s past year of commit activity

Nextflow 25 MIT 10 0 3 Updated Jul 12, 2024
rnaseq-voila Public Forked from KlinGenErasmusMC/rnaseq-voila
Jupyter Notebook / Voila App for analysis and filtering of RNA-Seq data for clinical genetics diagnostics

UMCUGenetics/rnaseq-voila’s past year of commit activity

Jupyter Notebook 0 MIT 1 0 0 Updated Jul 10, 2024
HapSMA Public
Nextflow Oxford Nanopore Technologies workflow for SMA dataprocessing

UMCUGenetics/HapSMA’s past year of commit activity

Nextflow 0 MIT 0 1 0 Updated Jul 10, 2024