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@bio-ontology-research-group

Bio-Ontology Research Group

Bio-Ontology Research Group at KAUST

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  1. deepgo deepgo Public

    Function prediction using a deep ontology-aware classifier

    Python 76 24

  2. machine-learning-with-ontologies machine-learning-with-ontologies Public

    Jupyter Notebook 123 31

  3. opa2vec opa2vec Public

    Turning Ontologies Plus Annotation Properties into Vectors

    Groovy 34 11

  4. phenomenet-vp phenomenet-vp Public

    A phenotype-based tool for variant prioritization in WES and WGS data

    Java 35 13

  5. el-embeddings el-embeddings Public

    Embeddings for ontologies in the Description Logic EL++

    Python 21 2

  6. DeepSVP DeepSVP Public

    Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity

    Python 16 4

Repositories

Showing 10 of 202 repositories
  • mowl Public

    mOWL: Machine Learning library with Ontologies

    bio-ontology-research-group/mowl’s past year of commit activity
    Python 51 BSD-3-Clause 4 10 1 Updated Jul 18, 2024
  • Genomic_context Public

    Protein function prediction (GO classes) using genomic context

    bio-ontology-research-group/Genomic_context’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 17, 2024
  • FEAS Public
    bio-ontology-research-group/FEAS’s past year of commit activity
    Python 0 0 0 0 Updated Jul 9, 2024
  • bio-ontology-research-group/hguploader’s past year of commit activity
    Common Workflow Language 0 0 0 0 Updated Jun 26, 2024
  • PU-GO Public

    Predicting protein functions using positive-unlabeled ranking with ontology-based priors

    bio-ontology-research-group/PU-GO’s past year of commit activity
    Python 2 1 0 0 Updated Jun 25, 2024
  • bio-ontology-research-group/deepgometa’s past year of commit activity
    Python 5 BSD-3-Clause 0 0 0 Updated Jun 24, 2024
  • catE Public

    Category-theoretic representation of ALC theories

    bio-ontology-research-group/catE’s past year of commit activity
    Python 1 2 0 0 Updated Jun 23, 2024
  • predCAN Public

    Ontology-based prediction of cancer driver genes

    bio-ontology-research-group/predCAN’s past year of commit activity
    Python 5 BSD-2-Clause 4 0 2 Updated Jun 17, 2024
  • pathophenodb Public

    Web application and additional content for PathoPhenoDB

    bio-ontology-research-group/pathophenodb’s past year of commit activity
    Python 7 0 2 5 Updated Jun 9, 2024
  • pangenome Public

    Pangenome workflow in CWL

    bio-ontology-research-group/pangenome’s past year of commit activity
    Common Workflow Language 1 BSD-3-Clause 1 0 0 Updated Jun 5, 2024

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