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Add kmertools v0.1.0 #48981

Merged
merged 8 commits into from
Jul 6, 2024
Merged

Add kmertools v0.1.0 #48981

merged 8 commits into from
Jul 6, 2024

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Vini2
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@Vini2 Vini2 commented Jul 6, 2024

Describe your pull request here

This PR adds kmertools to bioconda. kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics.


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@Vini2
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Vini2 commented Jul 6, 2024

@BiocondaBot please fetch artifacts

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Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
noarch kmertools-0.1.0-hdfd78af_0.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
kmertools 0.1.0--hdfd78af_0 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/kmertools:0.1.0--hdfd78af_0.tar.gz | docker load
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Vini2 commented Jul 6, 2024

Testing

conda install -c ./packages kmertools

which kmertools
/opt/miniconda3/bin/kmertools

kmertools --help

kmertools: DNA vectorisation

k-mer based vectorisation for DNA sequences for
metagenomics and AI/ML applications

Usage: kmertools <COMMAND>

Commands:
  comp  Generate sequence composition based features
  cov   Generates coverage histogram based on the reads
  min   Bin reads using minimisers
  ctr   Count k-mers
  help  Print this message or the help of the given subcommand(s)

Options:
  -h, --help
          Print help (see a summary with '-h')

  -V, --version
          Print version

Everything looks good!

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Vini2 commented Jul 6, 2024

@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Jul 6, 2024
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@Vini2
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Vini2 commented Jul 6, 2024

Hi @martin-g,

Thanks for reviewing and suggesting changes. I have made the requested changes. Can you please review them?

@Vini2 Vini2 requested a review from martin-g July 6, 2024 10:58
@martin-g martin-g enabled auto-merge (squash) July 6, 2024 11:16
@martin-g martin-g merged commit 168958c into bioconda:master Jul 6, 2024
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