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1. marker_gene_phylogeny marker_gene_phylogeny Public

   Runs phylosift to generate a marker gene phylogeny, useful for intra-genus comparisons.

   Python 1

2. asqcan asqcan Public

   Pipeline for bacterial genome assembly, quality control and annotation

   Python 4 1

3. snpiphy snpiphy Public

   An automated snp phylogeny pipeline

   Python 2 2

4. virseaqc virseaqc Public

   virseaqc - A combined pipeline for VIRal genome SEarching, Assembly, and Quality Control on Ion-Torrent instruments.

   Python 1 1