cmungall

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Chris Mungall cmungall

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linkml hacking

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Computer Research Scientist at Berkeley Lab. Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

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Lawrence Berkeley National Laboratory
Berkeley, CA
http://berkeleybop.org/people/chris-mungall
in/chrismungall
@Cmungall@genomic.social
https://bsky.app/profile/cmungall.bsky.social
@chrismungall

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cmungall/README.md

Chris Mungall (@cmungall)

Computer Research Scientist at Berkeley Lab.

Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

GPT-3 Summary

:

TODO

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obophenotype/uberon obophenotype/uberon Public

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 128 28
geneontology/go-ontology geneontology/go-ontology Public

Source ontology files for the Gene Ontology

Makefile 216 39
geneontology/obographs geneontology/obographs Public

Basic and Advanced OBO Graphs: specification and reference implementation

Java 63 12
evoldoers/biomake evoldoers/biomake Public

GNU-Make-like utility for managing builds and complex workflows

Prolog 100 9
monarch-initiative/ontogpt monarch-initiative/ontogpt Public

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 553 68
linkml/linkml linkml/linkml Public

Linked Open Data Modeling Language

Python 299 91