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kircherlab

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  1. CADD-scripts CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    Python 63 31

  2. cfDNA cfDNA Public

    cfDNA analysis workflow

    Python 20 5

  3. CADD-SV CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    Python 14 3

  4. hemoMIPs hemoMIPs Public

    Automated analysis and result reporting for targeted sequencing data

    Python 7 3

  5. MPRA_SaturationMutagenesis MPRA_SaturationMutagenesis Public

    R Shiny website of the Saturation Mutagenesis manuscript

    R 3 2

  6. MPRAsnakeflow MPRAsnakeflow Public

    new implementation of MPRAsnakeflow fork of MPRAflow

    Python 3 5

Repositories

Showing 10 of 20 repositories
  • bc_mpralm Public Forked from hansenlab/mpra

    Adaptation of mpralm that allows for modeling individual barcodes

    kircherlab/bc_mpralm’s past year of commit activity
    R 0 3 0 0 Updated Jul 19, 2024
  • MPRAsnakeflow Public

    new implementation of MPRAsnakeflow fork of MPRAflow

    kircherlab/MPRAsnakeflow’s past year of commit activity
    Python 3 MIT 5 11 4 Updated Jul 18, 2024
  • CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    kircherlab/CADD-SV’s past year of commit activity
    Python 14 MIT 3 2 0 Updated Jul 18, 2024
  • CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    kircherlab/CADD-scripts’s past year of commit activity
    Python 63 31 7 1 Updated Jul 16, 2024
  • cfDNA-UniFlow Public template

    Workflow for preprocessing cfDNA samples.

    kircherlab/cfDNA-UniFlow’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 0 Updated Jul 9, 2024
  • kircherlab.github.io Public

    Kircher Lab website

    kircherlab/kircherlab.github.io’s past year of commit activity
    HTML 1 0 0 0 Updated May 26, 2024
  • MPRAsnakeflow_tutorial Public
    kircherlab/MPRAsnakeflow_tutorial’s past year of commit activity
    0 0 0 0 Updated Feb 20, 2024
  • HowToTrainDNN Public

    Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany

    kircherlab/HowToTrainDNN’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 20, 2024
  • MPRAOligoDesign Public

    Basic scripts for creating an oligo design file

    kircherlab/MPRAOligoDesign’s past year of commit activity
    Python 0 MIT 0 5 2 Updated Feb 14, 2024
  • CADD-browserTracks Public

    UCSC genome browser tracks for CADD

    kircherlab/CADD-browserTracks’s past year of commit activity
    HTML 1 0 0 0 Updated Feb 2, 2024
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