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1. minimap2 minimap2 Public

   A versatile pairwise aligner for genomic and spliced nucleotide sequences

   C 1.7k 401

2. bwa bwa Public

   Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

   C 1.5k 550

3. minigraph minigraph Public

   Sequence-to-graph mapper and graph generator

   C 397 38

4. miniprot miniprot Public

   Align proteins to genomes with splicing and frameshift

   C 310 16

5. attractivechaos/klib attractivechaos/klib Public

   A standalone and lightweight C library

   C 4.1k 552

6. attractivechaos/kann attractivechaos/kann Public

   A lightweight C library for artificial neural networks

   C 672 116