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Repositories list R wrapper for the RACES package
• GNU General Public License v3.0
• 1• 2• 7• 0• Updated Jul 19, 2024 Jul 19, 2024 Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
GNU General Public License v3.0
• 2• 1• 8• 0• Updated Jul 18, 2024 Jul 18, 2024 CNAqc - Copy Number Alteration (CNA) Quality Check package
• GNU General Public License v3.0
• 8• 14• 3• 0• Updated Jul 18, 2024 Jul 18, 2024 Detecting mutational signatures via bayesian inference and a reference catalog
• GNU General Public License v3.0
• 1• 1• 1• 0• Updated Jul 17, 2024 Jul 17, 2024 • 0• 0• 0• 0• Updated Jul 16, 2024 Jul 16, 2024 Nextflow modules from the lab
• 4• 3• 11• 0• Updated Jul 15, 2024 Jul 15, 2024 Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
• GNU General Public License v3.0
• 0• 1• 0• 0• Updated Jul 5, 2024 Jul 5, 2024 devil
• • 1• 2• 0• 0• Updated Jul 4, 2024 Jul 4, 2024 Bayesian inference for population dynamics
• GNU General Public License v3.0
• 0• 0• 0• 0• Updated Jul 4, 2024 Jul 4, 2024 Inference of copy number and mutation multiplicity in oncology
• • 1• 1• 0• 0• Updated Jul 2, 2024 Jul 2, 2024 Mutational signatures deconvolution via Bayesian NMF
• GNU General Public License v3.0
• 1• 0• 0• 0• Updated Jul 1, 2024 Jul 1, 2024 Timing Inference for Copy number alterations: Tracking Alterations in Cancer Karyotypes
• • 0• 0• 0• 0• Updated Jun 5, 2024 Jun 5, 2024 Shiny Apps for INCOMMON
• 0• 0• 0• 0• Updated May 16, 2024 May 16, 2024 Tumour-in-Normal Contamination assessment with evolutionary theory.
• 1• 4• 0• 0• Updated Apr 25, 2024 Apr 25, 2024 generating and running synthetic data
• 0• 1• 0• 0• Updated Apr 19, 2024 Apr 19, 2024 rcongas
• GNU General Public License v3.0
• 1• 7• 3• 0• Updated Apr 10, 2024 Apr 10, 2024 • GNU General Public License v3.0
• 0• 4• 1• 0• Updated Apr 4, 2024 Apr 4, 2024 A R Framework for Single Cell Differential Expression Analysis
• • 0• 0• 0• 0• Updated Feb 7, 2024 Feb 7, 2024 • 0• 1• 0• 0• Updated Nov 12, 2023 Nov 12, 2023 Model-based subclonal deconvolution from bulk sequencing.
• GNU General Public License v3.0
• 7• 31• 1• 0• Updated Nov 9, 2023 Nov 9, 2023 A set of Pyro models and functions to infer CNA from scRNA-seq data
• GNU General Public License v3.0
• 0• 10• 0• 3• Updated Aug 14, 2023 Aug 14, 2023 A Pyro model to perform lineage inference from Gene Therapy assays
• GNU General Public License v3.0
• 0• 1• 0• 0• Updated Jun 30, 2023 Jun 30, 2023 A Python Framework for Single Cell Differential Expression ANalysis
• • 0• 0• 0• 0• Updated Jun 22, 2023 Jun 22, 2023 A repository to store and share code developed for the evoverse paper
• 0• 0• 0• 0• Updated Apr 20, 2023 Apr 20, 2023 REVOLVER - Repeated Evolution in Cancer
• 25• 64• 0• 1• Updated Dec 25, 2022 Dec 25, 2022 VIBER - Variational Binomial Mixtures
• 2• 2• 0• 0• Updated Jul 13, 2022 Jul 13, 2022 A classifier for clonal KEAP1 mutations.
• 0• 0• 0• 0• Updated Jun 20, 2022 Jun 20, 2022 Easy parallelisation of R computations.
• GNU General Public License v3.0
• 0• 1• 2• 0• Updated May 30, 2022 May 30, 2022 Landing repository for GitHub Pages
• 1• 1• 0• 0• Updated May 11, 2022 May 11, 2022 Binomial and Beta-Binomial mixture models for counts data.
• GNU General Public License v3.0
• 0• 5• 0• 0• Updated May 8, 2022 May 8, 2022
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