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@saeyslab

Saeys Lab

Data Mining and Modelling for Biomedicine, a VIB - UGent research unit

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  1. nichenetr nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    R 453 114

  2. FlowSOM FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    R 23 6

  3. multinichenetr multinichenetr Public

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    HTML 98 14

  4. PeacoQC PeacoQC Public

    Peak-based selection of high quality cytometry data

    R 14 7

  5. spotless-benchmark spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    R 26 1

  6. CytoNorm CytoNorm Public

    R library to normalize cytometry data

    R 31 6

Repositories

Showing 10 of 56 repositories
  • harpy Public
    saeyslab/harpy’s past year of commit activity
    Python 2 0 12 0 Updated Jul 19, 2024
  • CytoBright Public

    Estimate Stain Index for single stained cytometry files.

    saeyslab/CytoBright’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Jul 18, 2024
  • ViVAE Public

    Single-cell dimensionality reduction toolkit

    saeyslab/ViVAE’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 1 0 Updated Jul 10, 2024
  • ViScore Public

    Single-cell dimensionality reduction evaluation and benchmarking toolkit

    saeyslab/ViScore’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Jul 10, 2024
  • ComputationalCytometry Public

    Workshop computational cytometry

    saeyslab/ComputationalCytometry’s past year of commit activity
    R 1 0 0 0 Updated Jul 5, 2024
  • FlowSOM_Python Public

    The complete FlowSOM package known from R, now available in Python!

    saeyslab/FlowSOM_Python’s past year of commit activity
    Python 7 GPL-3.0 3 0 1 Updated Jul 5, 2024
  • FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    saeyslab/FlowSOM’s past year of commit activity
    R 23 6 4 0 Updated Jul 3, 2024
  • napari-sparrow Public
    saeyslab/napari-sparrow’s past year of commit activity
    Python 17 0 36 0 Updated Jul 3, 2024
  • VIB_Hackathon_June_2024 Public

    Code repository for the VIB Hackathon June 2024 on spatial omics. More info: https://hackmd.io/@berombau/BJetSxw8T

    saeyslab/VIB_Hackathon_June_2024’s past year of commit activity
    Jupyter Notebook 1 MIT 3 2 0 Updated Jun 24, 2024
  • spatial_ccc_experiments Public
    saeyslab/spatial_ccc_experiments’s past year of commit activity
    Jupyter Notebook 0 MIT 0 7 3 Updated Jun 13, 2024
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