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Issues list

Python 3.11,3.12 conda install fails.
#1218 opened May 15, 2024 by benjeffery
VCF parsing memory usage
#1168 opened Jan 11, 2024 by benjeffery
7
Parts of work redone when a dask worker dies
#1154 opened Dec 5, 2023 by benjeffery 0.9.1
2
Utilities to help with and/or automatically select VCF ingestion parameters IO Issues related to reading and writing common third-party file formats
#1123 opened Sep 4, 2023 by benjeffery
1
Comparing datasets - remapping alleles.
#1099 opened Jun 29, 2023 by benjeffery
vcf_to_zarr creates zero-sized first chunk which results in incorrect dtype. bug Something isn't working upstream Used when our build breaks due to upstream changes
#1090 opened May 18, 2023 by benjeffery 0.9.1
@benjeffery
8
Tests should use process-based dask
#1051 opened Mar 9, 2023 by benjeffery 0.9.1
3
Unused alleles being "" is confusing for downstream tools - consider None?
#1006 opened Jan 25, 2023 by benjeffery
12
Docs have floating top bar on latest? documentation Improvements or additions to documentation
#998 opened Jan 16, 2023 by benjeffery
3
Dataset cannot be opened when underlying zarr arrays have fill_value set. upstream Used when our build breaks due to upstream changes
#960 opened Nov 21, 2022 by benjeffery
gwas_tutorial.ipynb taking too long to run.
#934 opened Oct 17, 2022 by benjeffery
1
@benjeffery
10
import sgkit takes ~1.5s
#931 opened Oct 14, 2022 by benjeffery
7
ProTip! Follow long discussions with comments:>50.