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Issues list

Update docs to say "Scalable genetics toolkit"
#1223 opened Jun 7, 2024 by jeromekelleher
read_plink returns bytes for variant_alleles not unicode bug Something isn't working
#1209 opened Mar 6, 2024 by jeromekelleher
partition_into_regions: tabix index returns illegal region with multiple contigs bug Something isn't working
#1203 opened Mar 3, 2024 by jeromekelleher 0.9.1
partition_into_regions: CSI indexed BCFs return empty regions bug Something isn't working
#1202 opened Mar 3, 2024 by jeromekelleher 0.9.1
partition_into_regions: CSI indexed VCFs have incorrect sequence names bug Something isn't working
#1201 opened Mar 3, 2024 by jeromekelleher 0.9.1
read_scikit_allel_vcfzarr returns string pad values instead of missing for INFO fields bug Something isn't working
#1195 opened Feb 15, 2024 by jeromekelleher 0.9.1
Do chunk sizes have to be the same for all variables in a given dimension?
#1186 opened Feb 5, 2024 by jeromekelleher
1
Don't display attributes expanded for dataset enhancement New feature or request
#1157 opened Dec 14, 2023 by jeromekelleher 0.9.1
5
Set SGKIT_DISABLE_NUMBA_CACHE=1 by default bug Something isn't working
#1156 opened Dec 14, 2023 by jeromekelleher 0.9.1
3
Writing a subset of a dataset to VCF
#1155 opened Dec 8, 2023 by jeromekelleher
Docs: what is the cost of read_chunk_length in vcf_to_zare
#1128 opened Sep 8, 2023 by jeromekelleher
4
Docs: favicon not set? documentation Improvements or additions to documentation enhancement New feature or request
#1126 opened Sep 6, 2023 by jeromekelleher
1
Docs: how do I *update* a dataset on file? documentation Improvements or additions to documentation
#1125 opened Sep 5, 2023 by jeromekelleher
3
"show source" for function in docs shows rst code documentation Improvements or additions to documentation
#1117 opened Aug 22, 2023 by jeromekelleher 0.9.1
Link between variable and function to compute it data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc
#1115 opened Aug 17, 2023 by jeromekelleher
2
Logging from vcf_to_zarr enhancement New feature or request
#910 opened Sep 23, 2022 by jeromekelleher
2
Add function to convert variant dataset to biallelic core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#627 opened Jul 8, 2021 by jeromekelleher
2
Roadmap documentation Improvements or additions to documentation
#564 opened May 13, 2021 by jeromekelleher
Alignment with numpy dispatch protocols? dispatching Issues related to how we send method calls to different backends
#273 opened Sep 23, 2020 by jeromekelleher
Requirements for population structure analysis core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#226 opened Sep 1, 2020 by jeromekelleher
3 of 4 tasks
1
Encourage contributors to rebase feature branches to bring them up to date? documentation Improvements or additions to documentation process + tools
#140 opened Aug 24, 2020 by jeromekelleher
2
Recommend using branches in developer's fork documentation Improvements or additions to documentation process + tools
#129 opened Aug 20, 2020 by jeromekelleher
8
Add tskit as import format? enhancement New feature or request IO Issues related to reading and writing common third-party file formats question Further information is requested
#64 opened Jul 24, 2020 by jeromekelleher
9
Test IO on large scale data IO Issues related to reading and writing common third-party file formats performance
#48 opened Jul 16, 2020 by jeromekelleher
@jeromekelleher
25
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