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Issues list

Run tests against NumPy 2 upstream Used when our build breaks due to upstream changes
#1234 opened Jun 24, 2024 by tomwhite
2
Run tests against Zarr 3 upstream Used when our build breaks due to upstream changes
#1226 opened Jun 17, 2024 by tomwhite
3
Use Xarray's map_blocks rather than Dask's dispatching Issues related to how we send method calls to different backends
#1133 opened Sep 27, 2023 by tomwhite
Single-step VCF to Zarr conversion IO Issues related to reading and writing common third-party file formats
#1131 opened Sep 20, 2023 by tomwhite
Alternative execution engines for VCF conversion IO Issues related to reading and writing common third-party file formats
#1130 opened Sep 20, 2023 by tomwhite
5
Test with Zarr V3 IO Issues related to reading and writing common third-party file formats upstream Used when our build breaks due to upstream changes
#1118 opened Aug 23, 2023 by tomwhite
Benchmarks have stopped working process + tools
#1081 opened May 3, 2023 by tomwhite
1
Remove contigs dataset attribute data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc IO Issues related to reading and writing common third-party file formats
#1058 opened Apr 5, 2023 by tomwhite
Copy contigs from attribute to array in load_dataset IO Issues related to reading and writing common third-party file formats
#1057 opened Apr 5, 2023 by tomwhite 0.9.1
@benjeffery
Support quantitative trait values in plink IO Issues related to reading and writing common third-party file formats
#1023 opened Feb 14, 2023 by tomwhite
Write family information in write_plink IO Issues related to reading and writing common third-party file formats
#1010 opened Jan 30, 2023 by tomwhite
3
Populate parent_id variable in read_plink IO Issues related to reading and writing common third-party file formats
#1009 opened Jan 30, 2023 by tomwhite
2
Make sample_id from plink reader unique IO Issues related to reading and writing common third-party file formats
#1008 opened Jan 30, 2023 by tomwhite
4
Upstream failure: SystemError: initialization of _internal failed without raising an exception upstream Used when our build breaks due to upstream changes
#979 opened Dec 19, 2022 by tomwhite
1
Add gene-ε validation tests
#977 opened Dec 13, 2022 by tomwhite
Improve control over float formatting in VCF writer enhancement New feature or request IO Issues related to reading and writing common third-party file formats
#966 opened Nov 22, 2022 by tomwhite
1
Optimise VCF import performance
#936 opened Oct 17, 2022 by tomwhite
1
Update Development Status classifier in setup.cfg process + tools
#928 opened Oct 6, 2022 by tomwhite
1
Run on Cubed dispatching Issues related to how we send method calls to different backends
#908 opened Sep 22, 2022 by tomwhite
2
Unpin cbgen on Windows Python 3.8 once upstream is fixed upstream Used when our build breaks due to upstream changes
#879 opened Aug 2, 2022 by tomwhite
LD prune test is failing due to differences with scikit-allel bug Something isn't working
#864 opened Jun 9, 2022 by tomwhite
4
Xarray serialization warning when saving dataset bug Something isn't working upstream Used when our build breaks due to upstream changes
#853 opened May 6, 2022 by tomwhite
Run on Pyodide process + tools
#803 opened Jan 17, 2022 by tomwhite
1
Automatically publish docs on release documentation Improvements or additions to documentation
#768 opened Nov 18, 2021 by tomwhite
Can't convert VCF fields not defined in the header IO Issues related to reading and writing common third-party file formats
#728 opened Oct 6, 2021 by tomwhite
1
ProTip! no:milestone will show everything without a milestone.