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simongravelle/README.md

Simon Gravelle

Computer physicist in soft matter and fluids at interfaces in LIPhy, UGA, CNRS

What I share here on GitHub:

  • Molecular dynamics inputs for LAMMPS and GROMACS
  • Scripts for preparing and analyzing molecular dynamics simulations
  • Data from my recent publications

Github Channel Stars Github Channel Forks

Main open-source projects:

  • LAMMPS tutorials πŸ”— LAMMPS step-by-step guides for absolute beginners
  • GROMACS tutorials πŸ”— GROMACS step-by-step guides for absolute beginners
  • NMRforMD πŸ”— Python script for the calculation of H-NMR relaxation time
  • MDcourse πŸ”— Learn molecular simulations using Python (under construction)
  • MAICoS πŸ”— molecular analysis of interfacial and confined systems

Youtube channel

Videos of molecular simulations, mostly done with LAMMPS and GROMACS πŸ”—

YouTube Channel Views YouTube Channel Subscribers

See also

  • The gallery of molecules πŸ”— high-resolution molecules with scripts
  • ATB2LAMMPS πŸ”— a LAMMPS molecule template generator

Pinned Loading

  1. lammpstutorials/lammpstutorials.github.io lammpstutorials/lammpstutorials.github.io Public

    LAMMPS tutorials for both beginners and advanced users

    86 20

  2. lammps-input-files lammps-input-files Public

    LAMMPS inputs and data files

    216 91

  3. gromacstutorials/gromacstutorials.github.io gromacstutorials/gromacstutorials.github.io Public

    Repository of the gromacstutorials webpage

    9

  4. nmrformd nmrformd Public

    NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.

    Python 17 4

  5. PEGgenerator PEGgenerator Public

    Generate PEG topology for GROMACS and LAMMPS

    Jupyter Notebook 17 6

  6. publication-data publication-data Public

    Data from recent publications

    Jupyter Notebook 2