Sorger Lab @ Harvard Medical School

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indra indra Public

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

Python 167 64
rasmodel rasmodel Public

RAS Executable Model (REM)

Python 4 9
CancerBrowser CancerBrowser Public

HMS LINCS Cancer Browser

JavaScript 5 3

Repositories

indra Public
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

sorgerlab/indra’s past year of commit activity

Python 167 BSD-2-Clause 64 36 9 Updated Jul 19, 2024
famplex Public Forked from johnbachman/famplex
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

sorgerlab/famplex’s past year of commit activity

Python 18 CC0-1.0 30 28 2 Updated Jul 10, 2024
bioagents Public
Biological reasoning agents

sorgerlab/bioagents’s past year of commit activity

Python 4 BSD-2-Clause 15 7 2 Updated Apr 3, 2024
OMERO.forms Public
Extension to OMERO.web to enhance metadata input and provide provenance

sorgerlab/OMERO.forms’s past year of commit activity

Python 7 AGPL-3.0 4 4 3 Updated Dec 5, 2023
indra_assembly_paper Public
Automated assembly of molecular mechanisms at scale from text mining and curated databases

sorgerlab/indra_assembly_paper’s past year of commit activity

Jupyter Notebook 0 1 0 1 Updated Jan 23, 2023
pathwaymap.indra.bio Public
pathwaymap.indra.bio website

sorgerlab/pathwaymap.indra.bio’s past year of commit activity

JavaScript 2 BSD-2-Clause 1 0 7 Updated May 25, 2022
indra_apps Public

sorgerlab/indra_apps’s past year of commit activity

Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021
earm Public Forked from clopezx/earm
Extrinsic Apoptosis Reaction Model

sorgerlab/earm’s past year of commit activity

Python 1 17 3 1 Updated Oct 28, 2020
indra_pathway_map Public Forked from pvtodorov/indra_pathway_map

sorgerlab/indra_pathway_map’s past year of commit activity

JavaScript 0 BSD-2-Clause 5 0 0 Updated Jun 17, 2020
cycif Public
Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

sorgerlab/cycif’s past year of commit activity

MATLAB 9 MIT 4 0 0 Updated May 5, 2019