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metabolic-modeling

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franciscozorrilla / metaGEM

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💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

bioinformatics snakemake systems-biology computational-biology metagenomics metabolism microbiome metabolic-models flux-balance-analysis microbial-ecology gut-microbiome mags genome-scale-metabolic-model metagenome-assembled-genomes metabolic-modeling
  • Updated Jul 16, 2024
  • Python

earmingol / scCellFie

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scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.

systems-biology metabolism single-cell metabolic-pathways spatial-transcriptomics single-cell-transcriptomics metabolic-modeling
  • Updated Jul 19, 2024
  • Python

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