Bioinformatics software list
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Updated
Jan 15, 2019 - Perl
Bioinformatics software list
Collection of scripts for bacterial genomics
autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
Improve the quality of a denovo assembly by scaffolding and gap filling
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
Rapid large-scale prokaryote pan genome analysis
Multilocus sequence typing by blast using the schemes from PubMLST
Variant calling from RNA based sequencing data.
Allele-specific alignment sorting
A set of tools to analyse the output from TraDIS analyses
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Discovering known and novel miRNAs from small RNA sequencing data
Make personal protein databases using next generation sequencing data. (Personal copy)
Sequence Alignment tool
Sequence Alignment tool
Sequence Alignment tool
Sequence Alignment tool
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