Rapid large-scale prokaryote pan genome analysis
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Updated
Apr 21, 2022 - Perl
Rapid large-scale prokaryote pan genome analysis
Discovering known and novel miRNAs from small RNA sequencing data
Collection of scripts for bacterial genomics
A set of tools to analyse the output from TraDIS analyses
Improve the quality of a denovo assembly by scaffolding and gap filling
Allele-specific alignment sorting
Multilocus sequence typing by blast using the schemes from PubMLST
Bioinformatics software list
Merge transcriptome read-to-genome alignments into non-redundant transcript models
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
Variant calling from RNA based sequencing data.
Sequence Alignment tool
Sequence Alignment tool
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Make personal protein databases using next generation sequencing data. (Personal copy)
Various components for building RNA sequencing applications in Perl
Sequence Alignment tool
Sequence Alignment tool
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