Rapid large-scale prokaryote pan genome analysis
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Updated
Apr 21, 2022 - Perl
Rapid large-scale prokaryote pan genome analysis
Discovering known and novel miRNAs from small RNA sequencing data
Improve the quality of a denovo assembly by scaffolding and gap filling
Allele-specific alignment sorting
Collection of scripts for bacterial genomics
Multilocus sequence typing by blast using the schemes from PubMLST
A set of tools to analyse the output from TraDIS analyses
Merge transcriptome read-to-genome alignments into non-redundant transcript models
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Bioinformatics software list
Variant calling from RNA based sequencing data.
Make personal protein databases using next generation sequencing data. (Personal copy)
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
Sequence Alignment tool
Sequence Alignment tool
Sequence Alignment tool
Various components for building RNA sequencing applications in Perl
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