Analysis Pipeline for Single Cell ATAC-seq
-
Updated
Apr 27, 2023 - R
Analysis Pipeline for Single Cell ATAC-seq
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Papers with code for single cell related papers
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
<<------ Use SnapATAC!!
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
All-in-one analysis pipeline
Scripts for sincle cell multiome analysis
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Accurate and fast cell marker gene identification with COSG
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
Analyzing single cell ATAC data from the brains of drugged rats
Benchmarking computational single cell ATAC-seq methods
Add a description, image, and links to the single-cell-atac-seq topic page so that developers can more easily learn about it.
To associate your repository with the single-cell-atac-seq topic, visit your repo's landing page and select "manage topics."