An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
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Updated
May 21, 2024 - R
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Analysis Pipeline for Single Cell ATAC-seq
Papers with code for single cell related papers
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
Accurate and fast cell marker gene identification with COSG
All-in-one analysis pipeline
<<------ Use SnapATAC!!
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Scripts for sincle cell multiome analysis
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Comparison of the performance of AMULET and modified Scrublet on doublet removal in the CEMBA2.0 project.
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