About
Articles by Vijay
Activity
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It’s often said that necessity is the mother of invention, and I believe our rural communities might be our earliest adopters of AI in healthcare…
It’s often said that necessity is the mother of invention, and I believe our rural communities might be our earliest adopters of AI in healthcare…
Liked by Vijay Pande, PhD
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Dear LinkedIn Friends, Again this year, I'm riding 100 miles in the American Cancer Society's Bikes Battling Cancer ride. I'd appreciate any…
Dear LinkedIn Friends, Again this year, I'm riding 100 miles in the American Cancer Society's Bikes Battling Cancer ride. I'd appreciate any…
Liked by Vijay Pande, PhD
Experience & Education
Patents
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Method for rapidly approximating similarities
Issued US US 8706427 B2
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large…
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large similarity matrix construction problems, reducing the number of conventional slow similarity evaluations required from quadratic to linear scaling.
Other inventorsSee patent -
Accelerated molecular dynamics of proteins and other biomolecules
Issued US WO 2009151696 A3
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode…
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode Analysis (NMA), determining a harmonic approximation to the system around an initial equilibrium structure using a Mass Reweighted Hessian (MRH) of a biomolecular force field, using the partitioning to construct a damping matrix for the Langevin equation that overdamps and propagates high frequency modes using Brownian dynamics, propagating the low frequency modes using full Langevin dynamics, and accelerating the Brownian dynamics on the high frequency modes using an energy minimization. A coarse-grained normal mode analysis (CNMA) is also presented that enables application of this approach to very large proteins and long timescales.
Other inventorsSee patent
Honors & Awards
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Delano Award for Computational Biosciences
American Society for Biochemistry and Molecular Biology
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Mentoring Award, Stanford University Postdoctoral Association
Stanford University Postdoctoral Association
“In recognition of his excellent mentoring of postdocs."
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Michael and Kate Bárány Award for Young Investigators
Biophysical Society
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Thomas Kuhn Paradigm Shift Award
American Chemical Society
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Fellow
American Physical Society
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Netxplorateur of the Year
Netxplorateur
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Guinness World Record, Folding@home First to a Petaflop
Guinness
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Irving Sigal Young Investigator Award
Protein Society
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Technovators Award
Global Indus
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TechReview TR 100
MIT TechReview
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National Science Foundation Graduate Fellowship
National Science Foundation
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Fourth place, Westinghouse Science Talent Search Scholarship
Westinghouse Science
Languages
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English
Native or bilingual proficiency
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French
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More activity by Vijay
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My book on mathematical incompleteness is coming out soon! It's my middle life crisis project for 2 years worth of weekends Revisited my love of…
My book on mathematical incompleteness is coming out soon! It's my middle life crisis project for 2 years worth of weekends Revisited my love of…
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Since our very early days, when speaking with physicians - we consistently heard that the best drug for treatment of hyperphosphatrmia is the one…
Since our very early days, when speaking with physicians - we consistently heard that the best drug for treatment of hyperphosphatrmia is the one…
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Great spending time contemplating future frontiers and inflections with you Mathai Mammen, M.D., Ph.D. I’ve been fortunate to work with amazing…
Great spending time contemplating future frontiers and inflections with you Mathai Mammen, M.D., Ph.D. I’ve been fortunate to work with amazing…
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What an honor to kick off the scientific program of the #RICT2024 meeting in lovely #Bordeaux. Great to talk science and entrepreneurship with…
What an honor to kick off the scientific program of the #RICT2024 meeting in lovely #Bordeaux. Great to talk science and entrepreneurship with…
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Exciting approval of the 3rd monoclonal antibody treatment for Alzheimer's. Donanemab slows cognitive decline when given at the onset of symptoms…
Exciting approval of the 3rd monoclonal antibody treatment for Alzheimer's. Donanemab slows cognitive decline when given at the onset of symptoms…
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We are thrilled to announce our new Chair of the Stanford Department of Medicine, Dr. Euan Ashley. We have a great future ahead!!! Dr. Ashley becomes…
We are thrilled to announce our new Chair of the Stanford Department of Medicine, Dr. Euan Ashley. We have a great future ahead!!! Dr. Ashley becomes…
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Honored and humbled to be a part of this storied organization.
Honored and humbled to be a part of this storied organization.
Liked by Vijay Pande, PhD
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As a newly signed member of Function Health who has just completed my first two series of tests, this announcement only adds to my sense of hope and…
As a newly signed member of Function Health who has just completed my first two series of tests, this announcement only adds to my sense of hope and…
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Hmm, I think I will stick to regular whole-body MRIs for my aspirational self-care routine. I am not sure I'm ready for a continuous ultrasound, but…
Hmm, I think I will stick to regular whole-body MRIs for my aspirational self-care routine. I am not sure I'm ready for a continuous ultrasound, but…
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I am excited and honored to join the Duke University Board of Trustees. I first stepped on the Duke campus as a high school "TIP" student in the…
I am excited and honored to join the Duke University Board of Trustees. I first stepped on the Duke campus as a high school "TIP" student in the…
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Last week, our very own Magi Richani had the privilege of sharing the stage with Bill Gates to close the Breakthrough Energy Summit in London. The…
Last week, our very own Magi Richani had the privilege of sharing the stage with Bill Gates to close the Breakthrough Energy Summit in London. The…
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Disinformation affects us all. Read this message from our leaders about how we’re being impacted and what can be done to counter it…
Disinformation affects us all. Read this message from our leaders about how we’re being impacted and what can be done to counter it…
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“Healthcare just grew an opposable thumb and that thumb is AI," says Jonathan Swerdlin CEO of Function Health. Function Health, cofounded by…
“Healthcare just grew an opposable thumb and that thumb is AI," says Jonathan Swerdlin CEO of Function Health. Function Health, cofounded by…
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