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213 Open 472 Closed
213 Open 472 Closed
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Issues list

Concat VCF's in a sample-wise manner upstream Used when our build breaks due to upstream changes
#840 opened Apr 12, 2022 by AlksIDo
6
Some results of Allele Frequency Distributed Benchmark
#822 opened Feb 16, 2022 by LiangdeLI
1
Can we now expect use-feature 2020-resolver by default? process + tools
#810 opened Jan 20, 2022 by ravwojdyla
Run on Pyodide process + tools
#803 opened Jan 17, 2022 by tomwhite
1
Document best practice of windowing after filtering varaints
#795 opened Jan 9, 2022 by timothymillar
Update DocSearch documentation Improvements or additions to documentation
#787 opened Dec 28, 2021 by hammer
Increase the usage of augmented assignment statements
#771 opened Nov 21, 2021 by elfring
4
docker image
#770 opened Nov 19, 2021 by elswob
4
Automatically publish docs on release documentation Improvements or additions to documentation
#768 opened Nov 18, 2021 by tomwhite
0.3% of Sgkit and Hail's allele frequency results are different with Plink's
#753 opened Oct 28, 2021 by LiangdeLI
9
Can't convert VCF fields not defined in the header IO Issues related to reading and writing common third-party file formats
#728 opened Oct 6, 2021 by tomwhite
1
Implement gene set association analysis
#692 opened Sep 30, 2021 by eric-czech
11
Document how to release documentation Improvements or additions to documentation process + tools
#691 opened Sep 30, 2021 by hammer
1
1
Canine GWAS example notebook documentation Improvements or additions to documentation
#688 opened Sep 28, 2021 by hammer
@hammer @eric-czech
3
Follow up on guvectorize use of fastmath upstream Used when our build breaks due to upstream changes
#685 opened Sep 22, 2021 by hammer
PyData APIs notebook documentation Improvements or additions to documentation
#684 opened Sep 22, 2021 by hammer
@hammer
2
Clean up docs documentation Improvements or additions to documentation
#680 opened Sep 20, 2021 by hammer
3 tasks
1
@hammer
1
Migrate Discourse posts to GitHub Discussions
#670 opened Sep 14, 2021 by hammer
2 tasks
@hammer
Mean of windowed popgen stats
#662 opened Sep 9, 2021 by timothymillar
8
Port GFF3 I/O methods of scikit-allel to sgkit? IO Issues related to reading and writing common third-party file formats
#657 opened Aug 31, 2021 by hammer
Support macOS arm64 processors process + tools
#655 opened Aug 30, 2021 by tomwhite
10
"Compute" method naming convention documentation Improvements or additions to documentation process + tools
#651 opened Aug 19, 2021 by ravwojdyla
4
Can't read remote VCF files over https on Linux IO Issues related to reading and writing common third-party file formats
#645 opened Aug 2, 2021 by tomwhite
Use variable-length strings for storing alleles in Zarr data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc
#643 opened Jul 26, 2021 by tomwhite
3
Investigate ragged arrays to represent alleles data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc
#634 opened Jul 19, 2021 by tomwhite
6
ProTip! Exclude everything labeled bug with -label:bug.