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Issues list

Replace LinearRegressionResult with Dataset enhancement New feature or request
#63 opened Jul 23, 2020 by eric-czech
Improve memory usage of indexes in display_genotypes
#97 opened Aug 7, 2020 by tomwhite
Add SE to GWAS linear regression results core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#220 opened Aug 31, 2020 by eric-czech
Point to public datasets in our documentation documentation Improvements or additions to documentation
#233 opened Sep 3, 2020 by hammer
Alignment with numpy dispatch protocols? dispatching Issues related to how we send method calls to different backends
#273 opened Sep 23, 2020 by jeromekelleher
Improve warnings usage in docs examples documentation Improvements or additions to documentation
#288 opened Sep 30, 2020 by eric-czech
Take missing calls into account in popgen stats
#290 opened Oct 1, 2020 by tomwhite
Link variables to methods (and back) documentation Improvements or additions to documentation process + tools
#293 opened Oct 1, 2020 by ravwojdyla
Allow temporary directory used in bgen rechunking to be remote IO Issues related to reading and writing common third-party file formats
#317 opened Oct 8, 2020 by eric-czech
Add rsid to bgen reader result IO Issues related to reading and writing common third-party file formats
#318 opened Oct 8, 2020 by eric-czech
Document conventions that fall outside of code formatting documentation Improvements or additions to documentation
#325 opened Oct 14, 2020 by eric-czech
Use dask.array.utils.assert_eq in tests process + tools
#332 opened Oct 19, 2020 by tomwhite
Add function to remove windowing from a dataset
#333 opened Oct 19, 2020 by tomwhite
Allow unsigned integers for genotype counts
#343 opened Oct 21, 2020 by eric-czech
Track upstream improvements to concat and rechunk issue IO Issues related to reading and writing common third-party file formats upstream Used when our build breaks due to upstream changes
#366 opened Nov 2, 2020 by tomwhite
Document and test vcf_to_zarr's variant order guarantees documentation Improvements or additions to documentation IO Issues related to reading and writing common third-party file formats
#425 opened Dec 17, 2020 by tomwhite
PC-Relate investigate updates in the reference implementation/GENESIS enhancement New feature or request help wanted Extra attention is needed
#429 opened Dec 21, 2020 by ravwojdyla
Compute LD scores
#441 opened Jan 17, 2021 by hammer
Could RipTable improve performance? performance
#450 opened Feb 2, 2021 by hammer
Move to NumPy's ArrayLike and DtypeLike process + tools
#452 opened Feb 3, 2021 by tomwhite
Harness CUDA's shared memory to speed up GPU calculations
#517 opened Apr 6, 2021 by aktech
Data Management and Summary Statistics with PLINK (2020) documentation Improvements or additions to documentation
#529 opened Apr 19, 2021 by hammer
Add explicit checks for literal types
#540 opened Apr 23, 2021 by aktech
Make vector generation consistent for dask and numpy in distance tests
#543 opened Apr 23, 2021 by aktech
PRS notebook documentation Improvements or additions to documentation
#555 opened May 5, 2021 by hammer
ProTip! Updated in the last three days: updated:>2024-07-15.