The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
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Updated
Jul 17, 2024 - MATLAB
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
The consensus GEM for Saccharomyces cerevisiae
Toolbox for including enzyme constraints on a genome-scale model.
a modeling environment tailored to parameter estimation in dynamical systems
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
KroneckerBio modelling toolbox for systems biology
Gillespie Stochastic Simulation Algorithm
Icahn Graduate School of Medicine: Systems Biology & Biotechnology Specialization
A container for all enzyme constrained models created by GECKO.
Genome-scale model of Yarrowia lipolytica.
Matlab code and example models for model balancing
This repository provides the MATLAB scripts for our quantitative systems pharmacology model published in Front. Bioeng. Biotechnol., where we conduct an in silico clinical trial in breast cancer using anti-PD-1, anti-CTLA-4 antibody and an epigenetic modulator.
Metabolic Network Toolbox for MATLAB
Collection of scripts for improving lipid constraints in yeast-GEM
The Repository for the paper "Kinetic modelling of β-cell metabolism reveals control points in the insulin-regulating pyruvate cycling pathways"
MATLAB Toolbox for ODE constrained mixture models
RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.
Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
Matlab implementation of automated model reduction of biochemical reaction networks
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