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Articles by Vijay
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This is a good article by Food Dive on cultivated meat. Well-capitalized players have paused scale-up, and everyone is blending their products…
This is a good article by Food Dive on cultivated meat. Well-capitalized players have paused scale-up, and everyone is blending their products…
Liked by Vijay Pande, PhD
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We're hiring in Palo Alto! Come work with our outstanding and integrated group of cross-disciplinary researchers in RNA, cell biology, and ML. We're…
We're hiring in Palo Alto! Come work with our outstanding and integrated group of cross-disciplinary researchers in RNA, cell biology, and ML. We're…
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Function Health is on fire. 🔥 The health tech startup joined forces with Equinox to offer cutting edge biomarker lab testing and just raised a…
Function Health is on fire. 🔥 The health tech startup joined forces with Equinox to offer cutting edge biomarker lab testing and just raised a…
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Experience & Education
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Andreessen Horowitz
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Patents
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Method for rapidly approximating similarities
Issued US US 8706427 B2
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large…
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large similarity matrix construction problems, reducing the number of conventional slow similarity evaluations required from quadratic to linear scaling.
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Accelerated molecular dynamics of proteins and other biomolecules
Issued US WO 2009151696 A3
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode…
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode Analysis (NMA), determining a harmonic approximation to the system around an initial equilibrium structure using a Mass Reweighted Hessian (MRH) of a biomolecular force field, using the partitioning to construct a damping matrix for the Langevin equation that overdamps and propagates high frequency modes using Brownian dynamics, propagating the low frequency modes using full Langevin dynamics, and accelerating the Brownian dynamics on the high frequency modes using an energy minimization. A coarse-grained normal mode analysis (CNMA) is also presented that enables application of this approach to very large proteins and long timescales.
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Honors & Awards
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Delano Award for Computational Biosciences
American Society for Biochemistry and Molecular Biology
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Mentoring Award, Stanford University Postdoctoral Association
Stanford University Postdoctoral Association
“In recognition of his excellent mentoring of postdocs."
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Michael and Kate Bárány Award for Young Investigators
Biophysical Society
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Thomas Kuhn Paradigm Shift Award
American Chemical Society
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Fellow
American Physical Society
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Netxplorateur of the Year
Netxplorateur
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Guinness World Record, Folding@home First to a Petaflop
Guinness
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Irving Sigal Young Investigator Award
Protein Society
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Technovators Award
Global Indus
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TechReview TR 100
MIT TechReview
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National Science Foundation Graduate Fellowship
National Science Foundation
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Fourth place, Westinghouse Science Talent Search Scholarship
Westinghouse Science
Languages
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English
Native or bilingual proficiency
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French
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More activity by Vijay
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Toeing the line with what I can post here
Toeing the line with what I can post here
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This is a crazy cool opportunity to partner with the truly brilliant, visionary, and all around inspirational Daphne Koller (insitro founder & CEO)…
This is a crazy cool opportunity to partner with the truly brilliant, visionary, and all around inspirational Daphne Koller (insitro founder & CEO)…
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To drive significant change in healthcare, the advancements need to be vastly superior to existing solutions. Vijay Pande, PhD, a16z general…
To drive significant change in healthcare, the advancements need to be vastly superior to existing solutions. Vijay Pande, PhD, a16z general…
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Join me on The Doctor’s Farmacy as I sit down with two incredible experts, Vijay Pande, PhD and Daisy Wolf from a16z Bio + Health, to explore how AI…
Join me on The Doctor’s Farmacy as I sit down with two incredible experts, Vijay Pande, PhD and Daisy Wolf from a16z Bio + Health, to explore how AI…
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I am very grateful to Michiel Schaap and colleagues at HeartFlow, Inc for providing me with this gift of a 3D model of my own coronary arteries. I…
I am very grateful to Michiel Schaap and colleagues at HeartFlow, Inc for providing me with this gift of a 3D model of my own coronary arteries. I…
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"There's a better way to do urgent care" Hear more from our Chief Medical Officer Neil W. Wagle and Chief Medical Officer of Acute and Specialty…
"There's a better way to do urgent care" Hear more from our Chief Medical Officer Neil W. Wagle and Chief Medical Officer of Acute and Specialty…
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My role at Stanford is often behind the scenes, but today I made the news. Many thanks to my team, my mentors, my colleagues, and the Sarafan ChEM-H…
My role at Stanford is often behind the scenes, but today I made the news. Many thanks to my team, my mentors, my colleagues, and the Sarafan ChEM-H…
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Aiming for 100 healthy years, Function Health's platform collects over 100 biomarkers from lab tests, surpassing typical annual physicals, then…
Aiming for 100 healthy years, Function Health's platform collects over 100 biomarkers from lab tests, surpassing typical annual physicals, then…
Shared by Vijay Pande, PhD
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I’m thrilled to share that Samantha Palmer, head of Amgen Ventures, has been named to Global Corporate Venturing's (GVC) 2024 Powerlist which…
I’m thrilled to share that Samantha Palmer, head of Amgen Ventures, has been named to Global Corporate Venturing's (GVC) 2024 Powerlist which…
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excited to announce our Series A investment in k-ID, a first-of-its-kind global compliance engine simplifying online safety & privacy management for…
excited to announce our Series A investment in k-ID, a first-of-its-kind global compliance engine simplifying online safety & privacy management for…
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One of the most fun chats (literally) I've recently had. Thanks for having me Andrew Dunn and for the introvert friendly medium.
One of the most fun chats (literally) I've recently had. Thanks for having me Andrew Dunn and for the introvert friendly medium.
Liked by Vijay Pande, PhD
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This weekend at Aspen Ideas: Health, BioAge CEO Kristen Fortney, PhD joins thought leaders in longevity and rejuvenation biotech to discuss the…
This weekend at Aspen Ideas: Health, BioAge CEO Kristen Fortney, PhD joins thought leaders in longevity and rejuvenation biotech to discuss the…
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Thrilled to speak at Aspen Ideas Health this year! Expect a lively discussion on the next generation of #CRISPR-based genetic medicines with our…
Thrilled to speak at Aspen Ideas Health this year! Expect a lively discussion on the next generation of #CRISPR-based genetic medicines with our…
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