-
Notifications
You must be signed in to change notification settings - Fork 32
Issues: sgkit-dev/sgkit
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Make plink and bgen readers more consistent
IO
Issues related to reading and writing common third-party file formats
#319
opened Oct 8, 2020 by
eric-czech
6 tasks
Add rsid to bgen reader result
IO
Issues related to reading and writing common third-party file formats
#318
opened Oct 8, 2020 by
eric-czech
Allow temporary directory used in bgen rechunking to be remote
IO
Issues related to reading and writing common third-party file formats
#317
opened Oct 8, 2020 by
eric-czech
Determine why so many dask graphs are executed during QC filtering
#299
opened Oct 5, 2020 by
eric-czech
Link variables to methods (and back)
documentation
Improvements or additions to documentation
process + tools
#293
opened Oct 1, 2020 by
ravwojdyla
Improve warnings usage in docs examples
documentation
Improvements or additions to documentation
#288
opened Sep 30, 2020 by
eric-czech
Investigate jupyter-sphinx and potentially replace ipython-directive in docs
documentation
Improvements or additions to documentation
#287
opened Sep 29, 2020 by
eric-czech
Add PCA usage to user guide
documentation
Improvements or additions to documentation
#285
opened Sep 29, 2020 by
eric-czech
Add Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
count_call_alternate_alleles function
core operations
#282
opened Sep 25, 2020 by
eric-czech
6 tasks
Alignment with numpy dispatch protocols?
dispatching
Issues related to how we send method calls to different backends
#273
opened Sep 23, 2020 by
jeromekelleher
Add assert_array_shape calls to method code
core operations
Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
good first issue
Good for newcomers
#267
opened Sep 16, 2020 by
tomwhite
Point to public datasets in our documentation
documentation
Improvements or additions to documentation
#233
opened Sep 3, 2020 by
hammer
Requirements for population structure analysis
core operations
Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#226
opened Sep 1, 2020 by
jeromekelleher
3 of 4 tasks
Add SE to GWAS linear regression results
core operations
Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#220
opened Aug 31, 2020 by
eric-czech
Encourage contributors to rebase feature branches to bring them up to date?
documentation
Improvements or additions to documentation
process + tools
#140
opened Aug 24, 2020 by
jeromekelleher
Recommend using branches in developer's fork
documentation
Improvements or additions to documentation
process + tools
#129
opened Aug 20, 2020 by
jeromekelleher
Add variant annotation functions
core operations
Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#112
opened Aug 13, 2020 by
eric-czech
Find some way to keep requirements.txt in sync with install_requires in setup.cfg
process + tools
#89
opened Aug 3, 2020 by
eric-czech
Add Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
get_allele_type function
core operations
#84
opened Aug 3, 2020 by
eric-czech
ProTip!
Type g p on any issue or pull request to go back to the pull request listing page.