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Issues list

simulate_genotype_call_dataset creates alleles as byte strings bug Something isn't working
#1222 opened Jun 7, 2024 by hyanwong
1
simulate_genotype_call_dataset creates duplicate alleles bug Something isn't working
#1221 opened Jun 7, 2024 by hyanwong
vcf_to_zarr raises error instead of truncating INFO fields of length R bug Something isn't working IO Issues related to reading and writing common third-party file formats
#1210 opened Mar 7, 2024 by timothymillar
3
read_plink returns bytes for variant_alleles not unicode bug Something isn't working
#1209 opened Mar 6, 2024 by jeromekelleher
partition_into_regions: tabix index returns illegal region with multiple contigs bug Something isn't working
#1203 opened Mar 3, 2024 by jeromekelleher 0.9.1
partition_into_regions: CSI indexed BCFs return empty regions bug Something isn't working
#1202 opened Mar 3, 2024 by jeromekelleher 0.9.1
partition_into_regions: CSI indexed VCFs have incorrect sequence names bug Something isn't working
#1201 opened Mar 3, 2024 by jeromekelleher 0.9.1
read_scikit_allel_vcfzarr returns string pad values instead of missing for INFO fields bug Something isn't working
#1195 opened Feb 15, 2024 by jeromekelleher 0.9.1
Set SGKIT_DISABLE_NUMBA_CACHE=1 by default bug Something isn't working
#1156 opened Dec 14, 2023 by jeromekelleher 0.9.1
3
Use contig_id and filter_id arrays instead of attributes in write_vcf bug Something isn't working
#1101 opened Jul 8, 2023 by timothymillar 0.9.1
@benjeffery
1
vcf_to_zarr creates zero-sized first chunk which results in incorrect dtype. bug Something isn't working upstream Used when our build breaks due to upstream changes
#1090 opened May 18, 2023 by benjeffery 0.9.1
@benjeffery
8
LD prune test is failing due to differences with scikit-allel bug Something isn't working
#864 opened Jun 9, 2022 by tomwhite
4
Xarray serialization warning when saving dataset bug Something isn't working upstream Used when our build breaks due to upstream changes
#853 opened May 6, 2022 by tomwhite
♻️ cirun not shutting down GCE instances bug Something isn't working process + tools
#842 opened Apr 14, 2022 by ravwojdyla
19
Regenie validation script is broken bug Something isn't working
#624 opened Jul 7, 2021 by eric-czech
2
Dask reshape bug for arrays with fully chunked leading axes bug Something isn't working
#456 opened Feb 4, 2021 by ravwojdyla
1
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