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213 Open 472 Closed
213 Open 472 Closed
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Issues list

How do I identify the REF from a VCF
#1170 opened Jan 19, 2024 by hyanwong
1
4
VCF parsing memory usage
#1168 opened Jan 11, 2024 by benjeffery
7
How do I... additions documentation Improvements or additions to documentation
#1165 opened Jan 6, 2024 by hammer
3
Broken dask tutorial links in getting started guide documentation Improvements or additions to documentation
#1160 opened Dec 16, 2023 by isumitjha
1
Update copyright in the docs
#1158 opened Dec 16, 2023 by aktech
1
Don't display attributes expanded for dataset enhancement New feature or request
#1157 opened Dec 14, 2023 by jeromekelleher 0.9.1
5
Set SGKIT_DISABLE_NUMBA_CACHE=1 by default bug Something isn't working
#1156 opened Dec 14, 2023 by jeromekelleher 0.9.1
3
Writing a subset of a dataset to VCF
#1155 opened Dec 8, 2023 by jeromekelleher
Parts of work redone when a dask worker dies
#1154 opened Dec 5, 2023 by benjeffery 0.9.1
2
How do I add a new sample or variant data variable from a file? documentation Improvements or additions to documentation
#1151 opened Dec 2, 2023 by hammer
1
read_plink from cloud storage IO Issues related to reading and writing common third-party file formats
#1150 opened Dec 2, 2023 by hammer
1
Use Xarray's map_blocks rather than Dask's dispatching Issues related to how we send method calls to different backends
#1133 opened Sep 27, 2023 by tomwhite
Single-step VCF to Zarr conversion IO Issues related to reading and writing common third-party file formats
#1131 opened Sep 20, 2023 by tomwhite
Alternative execution engines for VCF conversion IO Issues related to reading and writing common third-party file formats
#1130 opened Sep 20, 2023 by tomwhite
5
Docs: what is the cost of read_chunk_length in vcf_to_zare
#1128 opened Sep 8, 2023 by jeromekelleher
4
Can we use KvikIO? IO Issues related to reading and writing common third-party file formats
#1127 opened Sep 7, 2023 by hammer
Docs: favicon not set? documentation Improvements or additions to documentation enhancement New feature or request
#1126 opened Sep 6, 2023 by jeromekelleher
1
Docs: how do I *update* a dataset on file? documentation Improvements or additions to documentation
#1125 opened Sep 5, 2023 by jeromekelleher
3
Utilities to help with and/or automatically select VCF ingestion parameters IO Issues related to reading and writing common third-party file formats
#1123 opened Sep 4, 2023 by benjeffery
1
Test with Zarr V3 IO Issues related to reading and writing common third-party file formats upstream Used when our build breaks due to upstream changes
#1118 opened Aug 23, 2023 by tomwhite
"show source" for function in docs shows rst code documentation Improvements or additions to documentation
#1117 opened Aug 22, 2023 by jeromekelleher 0.9.1
Link between variable and function to compute it data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc
#1115 opened Aug 17, 2023 by jeromekelleher
2
Validation build is failing process + tools
#1112 opened Aug 14, 2023 by hammer
Generalize convert_probability_to_call to multiallelic and polyploid cases
#1108 opened Aug 9, 2023 by timothymillar
PC-Relate and Bi-allelic sites
#1106 opened Jul 26, 2023 by tristanpwdennis
3
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