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213 Open 472 Closed
213 Open 472 Closed
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Issues list

Docs have floating top bar on latest? documentation Improvements or additions to documentation
#998 opened Jan 16, 2023 by benjeffery
3
Implement COAST enhancement New feature or request
#982 opened Jan 2, 2023 by hammer
Implement G123 selection statistic
#980 opened Dec 20, 2022 by sanjaynagi
8
Upstream failure: SystemError: initialization of _internal failed without raising an exception upstream Used when our build breaks due to upstream changes
#979 opened Dec 19, 2022 by tomwhite
1
Add gene-ε validation tests
#977 opened Dec 13, 2022 by tomwhite
Improve control over float formatting in VCF writer enhancement New feature or request IO Issues related to reading and writing common third-party file formats
#966 opened Nov 22, 2022 by tomwhite
1
Dataset cannot be opened when underlying zarr arrays have fill_value set. upstream Used when our build breaks due to upstream changes
#960 opened Nov 21, 2022 by benjeffery
Example notebook exercising gene-ε documentation Improvements or additions to documentation
#959 opened Nov 21, 2022 by hammer
@tomwhite
Example notebook exercising NVIDIA work on REGENIE documentation Improvements or additions to documentation
#958 opened Nov 21, 2022 by hammer
@hammer
Example notebook exercising pairwise distance on GPU documentation Improvements or additions to documentation
#957 opened Nov 21, 2022 by hammer
@jeromekelleher
2
tskit example of sgkit Zarr for intermediate data documentation Improvements or additions to documentation
#955 opened Nov 21, 2022 by hammer
2
Optimise VCF import performance
#936 opened Oct 17, 2022 by tomwhite
1
gwas_tutorial.ipynb taking too long to run.
#934 opened Oct 17, 2022 by benjeffery
1
@benjeffery
10
import sgkit takes ~1.5s
#931 opened Oct 14, 2022 by benjeffery
7
Update Development Status classifier in setup.cfg process + tools
#928 opened Oct 6, 2022 by tomwhite
1
maximise lossless compression of vcf_to_zarr
#925 opened Oct 6, 2022 by elswob
18
Can variable ld_prune_index_to_drop be implimented as a boolean array data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc question Further information is requested
#920 opened Sep 30, 2022 by timothymillar
Clarify covariates variable spec in gwas_linear_regression
#919 opened Sep 30, 2022 by timothymillar
Logging from vcf_to_zarr enhancement New feature or request
#910 opened Sep 23, 2022 by jeromekelleher
2
Run on Cubed dispatching Issues related to how we send method calls to different backends
#908 opened Sep 22, 2022 by tomwhite
2
Unpin cbgen on Windows Python 3.8 once upstream is fixed upstream Used when our build breaks due to upstream changes
#879 opened Aug 2, 2022 by tomwhite
gwas_linear_regression is sensitive to Dataset transposition
#868 opened Jun 29, 2022 by clwgg
6
LD prune test is failing due to differences with scikit-allel bug Something isn't working
#864 opened Jun 9, 2022 by tomwhite
4
Xarray serialization warning when saving dataset bug Something isn't working upstream Used when our build breaks due to upstream changes
#853 opened May 6, 2022 by tomwhite
♻️ cirun not shutting down GCE instances bug Something isn't working process + tools
#842 opened Apr 14, 2022 by ravwojdyla
19
ProTip! Adding no:label will show everything without a label.